Software

RankMotif++

This is the software pertaining to the publication

Xiaoyu Chen, Timothy R. Hughes & Quaid Morris (2007). "RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors". Bioinformatics 23(13):i72-i79.

It should compile and run on any distribution of Linux. The g++ compiler for C++ is required. See README.txt for detailed usage instructions.

Download RankMotif++ (source code) (TAR.GZ, 1.7MB)

Download RankMotif++ (binary for Linux x86_64) (TAR.GZ, 645KB)

ISOLATE

ISOLATE is a statistical model that simultaneously predicts the primary site of origin of cancers and addresses sample heterogeneity, while taking advantage of new high throughput sequencing technology that promises to bring higher accuracy and reproducibility to gene expression profiling experiments. ISOLATE makes predictions de novo, without having seen any training expression profiles of cancers with identified origin.

For more information and software download instructions, see the ISOLATE home page.